HL_6GZ5_069

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAGGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_069 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.189

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6GZ5|1|A2|U|4608
6GZ5|1|A2|G|4609
6GZ5|1|A2|A|4610
6GZ5|1|A2|G|4611
6GZ5|1|A2|G|4612
6GZ5|1|A2|A|4613

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AR

ribosomal protein eL19

Chain AU

ribosomal protein eL22

Chain Ad

ribosomal protein eL31