HL_6GZ5_071

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAAGGC

Length

8 nucleotides

Bulged bases

6GZ5|1|A2|A|4867, 6GZ5|1|A2|A|4868, 6GZ5|1|A2|A|4869, 6GZ5|1|A2|G|4870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_071 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.279

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6GZ5|1|A2|G|4865
6GZ5|1|A2|G|4866
6GZ5|1|A2|A|4867
6GZ5|1|A2|A|4868
6GZ5|1|A2|A|4869
6GZ5|1|A2|G|4870
6GZ5|1|A2|G|4871
6GZ5|1|A2|C|4872

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

ribosomal protein uL3

Chain AO

ribosomal protein uL13