HL_6GZ5_074
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAGCUAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GZ5_074 not in the Motif Atlas
- Geometric match to HL_7RQB_001
- Geometric discrepancy: 0.1852
- The information below is about HL_7RQB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99167.2
- Basepair signature
- cWW-F-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
6GZ5|1|A3|C|47
6GZ5|1|A3|A|48
6GZ5|1|A3|G|49
6GZ5|1|A3|C|50
6GZ5|1|A3|U|51
6GZ5|1|A3|A|52
6GZ5|1|A3|G|53
6GZ5|1|A3|C|54
6GZ5|1|A3|U|55
6GZ5|1|A3|G|56
Current chains
- Chain A3
- 5.8S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain AX
- ribosomal protein uL23
- Chain Ah
- ribosomal protein uL29
- Chain Aj
- ribosomal protein eL37
- Chain Al
- ribosomal protein eL39
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