HL_6GZ5_075
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUGAAUUGCAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 6GZ5|1|A3|A|84, 6GZ5|1|A3|U|85, 6GZ5|1|A3|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GZ5_075 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.4779
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6GZ5|1|A3|G|68
6GZ5|1|A3|U|69
6GZ5|1|A3|G|70
6GZ5|1|A3|A|71
6GZ5|1|A3|A|72
6GZ5|1|A3|U|73
6GZ5|1|A3|U|74
6GZ5|1|A3|G|75
6GZ5|1|A3|C|76
6GZ5|1|A3|A|77
6GZ5|1|A3|G|78
6GZ5|1|A3|G|79
6GZ5|1|A3|A|80
6GZ5|1|A3|C|81
6GZ5|1|A3|A|82
6GZ5|1|A3|C|83
6GZ5|1|A3|A|84
6GZ5|1|A3|U|85
6GZ5|1|A3|U|86
6GZ5|1|A3|G|87
6GZ5|1|A3|A|88
6GZ5|1|A3|U|89
6GZ5|1|A3|C|90
Current chains
- Chain A3
- 5.8S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain AY
- ribosomal protein uL24
- Chain Ah
- ribosomal protein uL29
- Chain Aj
- ribosomal protein eL37
- Chain Al
- ribosomal protein eL39
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