HL_6GZ5_077

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGUUCCUCCC

Length

11 nucleotides

Bulged bases

6GZ5|1|A3|U|123, 6GZ5|1|A3|U|124, 6GZ5|1|A3|C|125, 6GZ5|1|A3|C|128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_077 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.1951

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

6GZ5|1|A3|G|120
6GZ5|1|A3|G|121
6GZ5|1|A3|G|122
6GZ5|1|A3|U|123
6GZ5|1|A3|U|124
6GZ5|1|A3|C|125
6GZ5|1|A3|C|126
6GZ5|1|A3|U|127
6GZ5|1|A3|C|128
6GZ5|1|A3|C|129
6GZ5|1|A3|C|130

Current chains

Chain A3

5.8S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain AX

ribosomal protein uL23