HL_6GZ5_082
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGUAAUUCU
- Length
- 9 nucleotides
- Bulged bases
- 6GZ5|1|B1|U|160, 6GZ5|1|B1|U|161
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GZ5_082 not in the Motif Atlas
- Geometric match to HL_8KAL_001
- Geometric discrepancy: 0.3997
- The information below is about HL_8KAL_001
- Detailed Annotation
- GNRA with extra cWW
- Broad Annotation
- GNRA with extra cWW
- Motif group
- HL_87268.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
6GZ5|1|B1|G|155
6GZ5|1|B1|G|156
6GZ5|1|B1|U|157
6GZ5|1|B1|A|158
6GZ5|1|B1|A|159
6GZ5|1|B1|U|160
6GZ5|1|B1|U|161
6GZ5|1|B1|C|162
6GZ5|1|B1|U|163
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BG
- ribosomal protein eS6
- Chain BY
- ribosomal protein eS24
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