HL_6GZ5_087

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_087 not in the Motif Atlas

Geometric match to HL_3FOZ_004

Geometric discrepancy: 0.3915

The information below is about HL_3FOZ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

6GZ5|1|B1|G|377
6GZ5|1|B1|U|378
6GZ5|1|B1|C|379
6GZ5|1|B1|G|380
6GZ5|1|B1|C|381
6GZ5|1|B1|C|382
6GZ5|1|B1|G|383
6GZ5|1|B1|U|384
6GZ5|1|B1|G|385
6GZ5|1|B1|C|386
6GZ5|1|B1|C|387

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BI

ribosomal protein eS8

Chain BL

ribosomal protein uS17