HL_6GZ5_100
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GZ5_100 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.1857
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6GZ5|1|B1|A|957
6GZ5|1|B1|G|958
6GZ5|1|B1|G|959
6GZ5|1|B1|U|960
6GZ5|1|B1|G|961
6GZ5|1|B1|A|962
6GZ5|1|B1|A|963
6GZ5|1|B1|A|964
6GZ5|1|B1|U|965
6GZ5|1|B1|U|966
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain BF
- ribosomal protein uS7
- Chain BO
- ribosomal protein uS11
- Chain Ba
- ribosomal protein eS26
- Chain Bw
- Transfer RNA; tRNA
- Chain Bx
- mRNA
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