HL_6GZ5_110

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCCCCGAG

Length

8 nucleotides

Bulged bases

6GZ5|1|B1|C|1419, 6GZ5|1|B1|G|1420

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_110 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3526

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6GZ5|1|B1|C|1415
6GZ5|1|B1|C|1416
6GZ5|1|B1|C|1417
6GZ5|1|B1|C|1418
6GZ5|1|B1|C|1419
6GZ5|1|B1|G|1420
6GZ5|1|B1|A|1421
6GZ5|1|B1|G|1422

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BQ

ribosomal protein uS9

Chain BT

ribosomal protein eS19