HL_6GZQ_012

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

6GZQ|1|A1|G|354, 6GZQ|1|A1|A|355, 6GZQ|1|A1|A|356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_012 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1723

The information below is about HL_5J7L_144

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08002.11

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

21

Unit IDs

6GZQ|1|A1|G|352
6GZQ|1|A1|U|353
6GZQ|1|A1|G|354
6GZQ|1|A1|A|355
6GZQ|1|A1|A|356
6GZQ|1|A1|A|357
6GZQ|1|A1|G|358
6GZQ|1|A1|C|359
6GZQ|1|A1|C|360

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain E1

50S ribosomal protein L4

Chain T1

50S ribosomal protein L24