HL_6GZQ_021

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

6GZQ|1|A1|C|672

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_021 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.352

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

6GZQ|1|A1|C|668
6GZQ|1|A1|G|669
6GZQ|1|A1|A|670
6GZQ|1|A1|A|671
6GZQ|1|A1|C|672
6GZQ|1|A1|A|673
6GZQ|1|A1|G|674

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain K1

50S ribosomal protein L15

Chain b1

50S ribosomal protein L33

Chain d1

50S ribosomal protein L35