HL_6GZQ_022

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGUGAGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_022 not in the Motif Atlas

Homologous match to HL_7RQB_022

Geometric discrepancy: 0.1777

The information below is about HL_7RQB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6GZQ|1|A1|G|761
6GZQ|1|A1|G|762
6GZQ|1|A1|U|763
6GZQ|1|A1|G|764
6GZQ|1|A1|A|765
6GZQ|1|A1|G|766
6GZQ|1|A1|A|767
6GZQ|1|A1|C|768

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain O2

30S ribosomal protein S15

Chain Q2

30S ribosomal protein S17