HL_6GZQ_050

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6GZQ|1|A1|A|2054, 6GZQ|1|A1|A|2055, 6GZQ|1|A1|G|2056

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_050 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.1335

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

6GZQ|1|A1|G|2051
6GZQ|1|A1|U|2052
6GZQ|1|A1|G|2053
6GZQ|1|A1|A|2054
6GZQ|1|A1|A|2055
6GZQ|1|A1|G|2056
6GZQ|1|A1|A|2057
6GZQ|1|A1|U|2058
6GZQ|1|A1|G|2059
6GZQ|1|A1|C|2060

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L3

Chain a1

50S ribosomal protein L32