HL_6GZQ_057

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_057 not in the Motif Atlas

Homologous match to HL_7RQB_057

Geometric discrepancy: 0.1503

The information below is about HL_7RQB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

6GZQ|1|A1|C|2369
6GZQ|1|A1|C|2370
6GZQ|1|A1|U|2371
6GZQ|1|A1|G|2372
6GZQ|1|A1|C|2373
6GZQ|1|A1|A|2374
6GZQ|1|A1|A|2375
6GZQ|1|A1|G|2376

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain K1

50S ribosomal protein L15

Chain V1

50S ribosomal protein L27

Chain d1

50S ribosomal protein L35