3D structure

PDB id
6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
T. thermophilus hibernating 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.28 Å

Loop

Sequence
GGUAAUGGC
Length
9 nucleotides
Bulged bases
6GZQ|1|A2|G|261
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6GZQ_075 not in the Motif Atlas
Homologous match to HL_5J7L_006
Geometric discrepancy: 0.314
The information below is about HL_5J7L_006
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_84299.4
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
9

Unit IDs

6GZQ|1|A2|G|254
6GZQ|1|A2|G|255
6GZQ|1|A2|U|256
6GZQ|1|A2|A|257
6GZQ|1|A2|A|258
6GZQ|1|A2|U|259
6GZQ|1|A2|G|260
6GZQ|1|A2|G|261
6GZQ|1|A2|C|262

Current chains

Chain A2
16S ribosomal RNA

Nearby chains

Chain Q2
30S ribosomal protein S17
Chain T2
30S ribosomal protein S20

Coloring options:


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