HL_6GZQ_083

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_083 not in the Motif Atlas

Homologous match to HL_5J7L_014

Geometric discrepancy: 0.2355

The information below is about HL_5J7L_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6GZQ|1|A2|G|600
6GZQ|1|A2|C|601
6GZQ|1|A2|U|602
6GZQ|1|A2|C|603
6GZQ|1|A2|A|604
6GZQ|1|A2|A|605
6GZQ|1|A2|C|606

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain D2

30S ribosomal protein S4

Chain P2

30S ribosomal protein S16