HL_6GZQ_086

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

6GZQ|1|A2|U|776

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_086 not in the Motif Atlas

Homologous match to HL_6CZR_088

Geometric discrepancy: 0.2495

The information below is about HL_6CZR_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

6GZQ|1|A2|G|769
6GZQ|1|A2|A|770
6GZQ|1|A2|U|771
6GZQ|1|A2|U|772
6GZQ|1|A2|A|773
6GZQ|1|A2|G|774
6GZQ|1|A2|A|775
6GZQ|1|A2|U|776
6GZQ|1|A2|A|777
6GZQ|1|A2|C|778
6GZQ|1|A2|C|779

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain K2

30S ribosomal protein S11

Chain V2

Ribosome hibernation promoting factor