HL_6GZQ_087

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

6GZQ|1|A2|U|822, 6GZQ|1|A2|U|824

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_087 not in the Motif Atlas

Homologous match to HL_4LFB_018

Geometric discrepancy: 0.3545

The information below is about HL_4LFB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46878.1

Basepair signature

cWW-F

Number of instances in this motif group

30

Unit IDs

6GZQ|1|A2|G|821
6GZQ|1|A2|U|822
6GZQ|1|A2|C|823
6GZQ|1|A2|U|824
6GZQ|1|A2|C|825

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain B2

30S ribosomal protein S2