HL_6GZQ_090

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

6GZQ|1|A2|G|948

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_090 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.2052

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6GZQ|1|A2|G|940
6GZQ|1|A2|A|941
6GZQ|1|A2|A|942
6GZQ|1|A2|G|943
6GZQ|1|A2|C|944
6GZQ|1|A2|A|945
6GZQ|1|A2|A|946
6GZQ|1|A2|C|947
6GZQ|1|A2|G|948
6GZQ|1|A2|C|949

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain I2

30S ribosomal protein S9

Chain J2

30S ribosomal protein S10

Chain V2

Ribosome hibernation promoting factor