HL_6GZQ_096

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_096 not in the Motif Atlas

Homologous match to HL_4LFB_028

Geometric discrepancy: 0.2289

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6GZQ|1|A2|G|1246
6GZQ|1|A2|G|1247
6GZQ|1|A2|C|1248
6GZQ|1|A2|A|1249
6GZQ|1|A2|A|1250
6GZQ|1|A2|C|1251

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain M2

30S ribosomal protein S13

Chain S2

30S ribosomal protein S19

Chain U2

30S ribosomal protein Thx