HL_6GZQ_116

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

6GZQ|1|A1|A|336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_116 not in the Motif Atlas

Homologous match to HL_4WF9_010

Geometric discrepancy: 0.2008

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

6GZQ|1|A1|U|330
6GZQ|1|A1|U|331
6GZQ|1|A1|G|332
6GZQ|1|A1|G|333
6GZQ|1|A1|G|334
6GZQ|1|A1|A|335
6GZQ|1|A1|A|336
6GZQ|1|A1|G|337

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain T1

50S ribosomal protein L24