HL_6GZQ_117

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_117 not in the Motif Atlas

Homologous match to HL_9DFE_026

Geometric discrepancy: 0.1774

The information below is about HL_9DFE_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6GZQ|1|A1|G|1026
6GZQ|1|A1|G|1027
6GZQ|1|A1|A|1028
6GZQ|1|A1|A|1029
6GZQ|1|A1|C|1030
6GZQ|1|A1|A|1031
6GZQ|1|A1|A|1032
6GZQ|1|A1|C|1033

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain P1

50S ribosomal protein L20

Chain Y1

50S ribosomal protein L30