HL_6GZX_003

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

6GZX|1|A1|G|123

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_003 not in the Motif Atlas

Homologous match to HL_7A0S_003

Geometric discrepancy: 0.2907

The information below is about HL_7A0S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6GZX|1|A1|G|121
6GZX|1|A1|G|122
6GZX|1|A1|G|123
6GZX|1|A1|A|124
6GZX|1|A1|A|125
6GZX|1|A1|C|126

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain S1

50S ribosomal protein L23

Chain c1

50S ribosomal protein L34