RNA 3D Hub //

6GZX Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6GZX_0061/A1/177:199No text annotation
HL_6GZX_0071/A1/215:220No text annotation
homologous
HL_7A0S_007
HL_51020.2
HL_6GZX_0081/A1/236:242No text annotation
geometric
HL_3IGI_004
HL_37569.3
HL_6GZX_0131/A1/407:423No text annotation
HL_6GZX_0151/A1/489:496No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_6GZX_1971/A1/570:575GNRA related
geometric
HL_5J7L_179
NA
HL_6GZX_1981/A1/791:805No text annotation
HL_6GZX_2431/A1/924:950No text annotation
HL_6GZX_2001/A1/1001:1011tRNA anticodon loop
geometric
HL_8H1B_001
HL_86621.1
HL_6GZX_0251/A1/1002:1009GNRA
homologous
HL_7A0S_026
HL_34789.4
HL_6GZX_2461/A1/1367:1381No text annotation
HL_6GZX_0321/A1/1437:1446No text annotation
homologous
HL_7RQB_036
NA
HL_6GZX_2471/A1/1497:1512No text annotation
HL_6GZX_0331/A1/1501:1508Mini UNCG related
geometric
HL_4V9F_004
HL_12626.2
HL_6GZX_0361/A1/1659:1668No text annotation
HL_6GZX_0371/A1/1678:1685No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_6GZX_0381/A1/1735:1751No text annotation
HL_6GZX_2041/A1/1810:1820No text annotation
homologous
HL_4WF9_043
HL_87681.1
HL_6GZX_0421/A1/1884:1915No text annotation
HL_6GZX_0441/A1/1973:1981No text annotation
homologous
HL_4WF9_046
HL_61418.2
HL_6GZX_2481/A1/2051:2060No text annotation
homologous
HL_4WF9_047
HL_78372.1
HL_6GZX_0471/A1/2225:2236No text annotation
geometric
HL_7KI3_001
HL_75660.7
HL_6GZX_0491/A1/2278:2290No text annotation
HL_6GZX_0581/A1/2608:2613GNRA
homologous
HL_5J7L_196
NA
HL_6GZX_2131/A1/2831:2839No text annotation
homologous
HL_4WF9_064
HL_37889.1
HL_6GZX_0661/A2/85:95No text annotation
homologous
HL_7A0S_002
HL_76590.1
HL_6GZX_0701/A2/177:199No text annotation
HL_6GZX_0721/A2/236:242No text annotation
geometric
HL_3IGI_004
HL_37569.3
HL_6GZX_0731/A2/269:277No text annotation
HL_6GZX_2141/A2/438:445Pseudoknot geometry
homologous
HL_5J7L_146
NA
HL_6GZX_0791/A2/490:495GNRA
homologous
HL_4WF9_015
HL_34789.4
HL_6GZX_0831/A2/656:661GNRA
homologous
HL_4WF9_020
HL_34789.4
HL_6GZX_2171/A2/787:807No text annotation
HL_6GZX_0861/A2/793:802No text annotation
homologous
HL_4WF9_023
HL_50204.1
HL_6GZX_0871/A2/828:834UNCG variation
homologous
HL_7A0S_023
HL_51020.2
HL_6GZX_2511/A2/875:880No text annotation
homologous
HL_5J7L_157
NA
HL_6GZX_0891/A2/924:950No text annotation
HL_6GZX_2181/A2/1001:1011No text annotation
HL_6GZX_0901/A2/1002:1009GNRA
homologous
HL_7A0S_026
HL_34789.4
HL_6GZX_0921/A2/1139:1148No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_6GZX_0931/A2/1212:1232No text annotation
HL_6GZX_0951/A2/1325:1341No text annotation
geometric
HL_5TBW_226
NA
HL_6GZX_0961/A2/1367:1381No text annotation
HL_6GZX_0981/A2/1437:1446No text annotation
homologous
HL_5J7L_168
NA
HL_6GZX_1031/A2/1678:1685No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_6GZX_1071/A2/1809:1821No text annotation
homologous
HL_7A0S_045
HL_50951.1
HL_6GZX_1081/A2/1830:1855No text annotation
HL_6GZX_1111/A2/1973:1981No text annotation
homologous
HL_4WF9_046
HL_61418.2
HL_6GZX_2531/A2/2044:2058No text annotation
HL_6GZX_2221/A2/2047:2064No text annotation
HL_6GZX_1121/A2/2050:2061No text annotation
HL_6GZX_2231/A2/2119:2218No text annotation
HL_6GZX_1131/A2/2121:2216No text annotation
HL_6GZX_2541/A2/2227:2234No text annotation
HL_6GZX_1151/A2/2261:2271No text annotation
HL_6GZX_1161/A2/2278:2290No text annotation
homologous
HL_4WF9_050
HL_02042.1
HL_6GZX_2551/A2/2364:2381No text annotation
HL_6GZX_1191/A2/2367:2378No text annotation
HL_6GZX_2561/A2/2830:2840No text annotation
HL_6GZX_1351/A3/185:192No text annotation
homologous
HL_4LFB_004
HL_89167.2
HL_6GZX_2581/A3/315:328No text annotation
homologous
HL_5J7L_008
NA
HL_6GZX_2311/A3/504:511No text annotation
homologous
HL_4LFB_013
NA
HL_6GZX_1441/A3/505:510No text annotation
geometric
HL_5U3G_001
HL_75660.7
HL_6GZX_1481/A3/769:779No text annotation
HL_6GZX_2341/A4/63:97No text annotation
HL_6GZX_1631/A4/67:95No text annotation
HL_6GZX_2351/A4/179:198No text annotation
HL_6GZX_1651/A4/180:197No text annotation
HL_6GZX_2391/A4/504:511No text annotation
homologous
HL_4LFB_013
NA
HL_6GZX_1731/A4/505:510No text annotation
geometric
HL_5U3G_001
HL_75660.7
HL_6GZX_1751/A4/666:690No text annotation
HL_6GZX_2401/A4/762:786No text annotation
HL_6GZX_1771/A4/768:780No text annotation
HL_6GZX_1821/A4/986:999No text annotation
HL_6GZX_1861/A4/1145:1154No text annotation
geometric
HL_7A0S_011
HL_75660.7
HL_6GZX_2411/A4/1292:1307No text annotation
HL_6GZX_1881/A4/1295:1304T-loop with 3 stacked bulged bases
homologous
HL_5J7L_028
NA
HL_6GZX_1911/A4/1492:1497GNRA
homologous
HL_6CZR_103
NA
HL_6GZX_1921/B1/21:67No text annotation
HL_6GZX_1931/B1/88:93GNRA
homologous
HL_7A0S_070
HL_34789.4
HL_6GZX_1951/B2/88:93GNRA
homologous
HL_7A0S_070
HL_34789.4

Problematic loops

#loop idProblemSequence
HL_6GZX_001No text annotation
HL_6GZX_002No text annotation
HL_6GZX_003No text annotation
HL_6GZX_004No text annotation
HL_6GZX_005No text annotation
HL_6GZX_242No text annotation
HL_6GZX_009No text annotation
HL_6GZX_196No text annotation
HL_6GZX_010No text annotation
HL_6GZX_011No text annotation
HL_6GZX_012T-loop with unstacked turn
HL_6GZX_014No text annotation
HL_6GZX_016GNRA
HL_6GZX_017No text annotation
HL_6GZX_018No text annotation
HL_6GZX_019No text annotation
HL_6GZX_020No text annotation
HL_6GZX_021GNRA wlth tandem sheared
HL_6GZX_022No text annotation
HL_6GZX_023No text annotation
HL_6GZX_199No text annotation
HL_6GZX_024Mini UNCG
HL_6GZX_026No text annotation
HL_6GZX_244No text annotation
HL_6GZX_027No text annotation
HL_6GZX_028GNRA
HL_6GZX_029No text annotation
HL_6GZX_245T-loop with 2 stacked bulged bases
HL_6GZX_030No text annotation
HL_6GZX_201No text annotation
HL_6GZX_031No text annotation
HL_6GZX_202No text annotation
HL_6GZX_203No text annotation
HL_6GZX_034No text annotation
HL_6GZX_035No text annotation
HL_6GZX_039No text annotation
HL_6GZX_040No text annotation
HL_6GZX_041No text annotation
HL_6GZX_043No text annotation
HL_6GZX_205No text annotation
HL_6GZX_206No text annotation
HL_6GZX_045No text annotation
HL_6GZX_046No text annotation
HL_6GZX_249No text annotation
HL_6GZX_207tRNA anticodon loop
HL_6GZX_048Pseudoknot geometry
HL_6GZX_050No text annotation
HL_6GZX_208No text annotation
HL_6GZX_051Pseudoknot geometry
HL_6GZX_209No text annotation
HL_6GZX_052No text annotation
HL_6GZX_053No text annotation
HL_6GZX_210No text annotation
HL_6GZX_054No text annotation
HL_6GZX_055No text annotation
HL_6GZX_056No text annotation
HL_6GZX_211No text annotation
HL_6GZX_212No text annotation
HL_6GZX_057No text annotation
HL_6GZX_059No text annotation
HL_6GZX_060No text annotation
HL_6GZX_061No text annotation
HL_6GZX_062No text annotation
HL_6GZX_063No text annotation
HL_6GZX_064GNRA
HL_6GZX_065No text annotation
HL_6GZX_067No text annotation
HL_6GZX_068No text annotation
HL_6GZX_069No text annotation
HL_6GZX_071No text annotation
HL_6GZX_074No text annotation
HL_6GZX_075No text annotation
HL_6GZX_076T-loop with unstacked turn
HL_6GZX_077No text annotation
HL_6GZX_250No text annotation
HL_6GZX_078No text annotation
HL_6GZX_215GNRA with extra cWW
HL_6GZX_080GNRA
HL_6GZX_081GNRA with extra near cWW
HL_6GZX_216GNRA
HL_6GZX_082No text annotation
HL_6GZX_084No text annotation
HL_6GZX_085GNRA wlth tandem sheared
HL_6GZX_088No text annotation
HL_6GZX_091No text annotation
HL_6GZX_094GNRA
HL_6GZX_219No text annotation
HL_6GZX_097GNRA variation
HL_6GZX_099No text annotation
HL_6GZX_100No text annotation
HL_6GZX_220No text annotation
HL_6GZX_101No text annotation
HL_6GZX_102Mini UNCG
HL_6GZX_104UNCG
HL_6GZX_105No text annotation
HL_6GZX_252GNRA
HL_6GZX_106No text annotation
HL_6GZX_109No text annotation
HL_6GZX_110No text annotation
HL_6GZX_221No text annotation
HL_6GZX_114No text annotation
HL_6GZX_224No text annotation
HL_6GZX_117No text annotation
HL_6GZX_225No text annotation
HL_6GZX_118Pseudoknot geometry
HL_6GZX_226No text annotation
HL_6GZX_120GNRA
HL_6GZX_121No text annotation
HL_6GZX_227No text annotation
HL_6GZX_228No text annotation
HL_6GZX_122No text annotation
HL_6GZX_123No text annotation
HL_6GZX_124No text annotation
HL_6GZX_125GNRA
HL_6GZX_126No text annotation
HL_6GZX_127No text annotation
HL_6GZX_128No text annotation
HL_6GZX_129No text annotation
HL_6GZX_130No text annotation
HL_6GZX_131No text annotation
HL_6GZX_132No text annotation
HL_6GZX_133No text annotation
HL_6GZX_229No text annotation
HL_6GZX_134GNRA
HL_6GZX_136No text annotation
HL_6GZX_137GNRA related
HL_6GZX_230No text annotation
HL_6GZX_138T-loop with 2 bulged bases not stacked
HL_6GZX_257GNRA
HL_6GZX_139No text annotation
HL_6GZX_140UNCG
HL_6GZX_141GNRA
HL_6GZX_142No text annotation
HL_6GZX_259UNCG
HL_6GZX_143No text annotation
HL_6GZX_145GNRA-like with tWH
HL_6GZX_146No text annotation
HL_6GZX_147GNRA
HL_6GZX_149Mini UNCG
HL_6GZX_150GNRA
HL_6GZX_151T-loop with 2 stacked bulged bases
HL_6GZX_152No text annotation
HL_6GZX_153No text annotation
HL_6GZX_154GNRA
HL_6GZX_155No text annotation
HL_6GZX_156No text annotation
HL_6GZX_232No text annotation
HL_6GZX_260No text annotation
HL_6GZX_157No text annotation
HL_6GZX_158No text annotation
HL_6GZX_261No text annotation
HL_6GZX_159No text annotation
HL_6GZX_160No text annotation
HL_6GZX_161GNRA
HL_6GZX_162No text annotation
HL_6GZX_233No text annotation
HL_6GZX_164No text annotation
HL_6GZX_166Externally structured
HL_6GZX_167GNRA related
HL_6GZX_236No text annotation
HL_6GZX_168T-loop with 2 stacked bulged bases
HL_6GZX_169UNCG
HL_6GZX_170No text annotation
HL_6GZX_237No text annotation
HL_6GZX_171No text annotation
HL_6GZX_172No text annotation
HL_6GZX_238No text annotation
HL_6GZX_174GNRA-like with tWH
HL_6GZX_176GNRA with extra cWW
HL_6GZX_178No text annotation
HL_6GZX_179GNRA
HL_6GZX_180GNRA
HL_6GZX_181No text annotation
HL_6GZX_183GNRA
HL_6GZX_184T-loop related
HL_6GZX_185No text annotation
HL_6GZX_187No text annotation
HL_6GZX_189No text annotation
HL_6GZX_190No text annotation
HL_6GZX_194No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6GZX_0021/A1/229:236,
1/A1/242:248		No text annotation
IL_6GZX_1991/A1/291:318,
1/A1/372:396		No text annotation
IL_6GZX_0041/A1/721:727,
1/A1/848:857		No text annotation
IL_6GZX_2691/A1/731:740,
1/A1/820:845		No text annotation
IL_6GZX_0061/A1/749:756,
1/A1/773:781		No text annotation
geometric
IL_4WF9_119
NA
IL_6GZX_0071/A1/787:791,
1/A1/805:807		No text annotation
IL_6GZX_0081/A1/791:792,
1/A1/803:805		Single stack bend
geometric
IL_7RQB_058
NA
IL_6GZX_0101/A1/893:899,
1/A1/975:981		No text annotation
geometric
IL_9DFE_024
IL_68243.1
IL_6GZX_2031/A1/907:918,
1/A1/956:967		No text annotation
IL_6GZX_0131/A1/913:918,
1/A1/956:960		No text annotation
geometric
IL_4V9F_035
IL_38603.1
IL_6GZX_0141/A1/923:931,
1/A1/941:951		No text annotation
IL_6GZX_0151/A1/999:1001,
1/A1/1011:1012		Single stack bend
geometric
IL_4WF9_007
IL_15011.2
IL_6GZX_0161/A1/1001:1002,
1/A1/1009:1011		Single base bend
geometric
IL_5IBB_340
IL_15011.2
IL_6GZX_2701/A1/1044:1054,
1/A1/1184:1207		No text annotation
IL_6GZX_0201/A1/1061:1072,
1/A1/1187:1197		No text annotation
IL_6GZX_0221/A1/1089:1101,
1/A1/1154:1162		No text annotation
IL_6GZX_0231/A1/1243:1248,
1/A1/1293:1298		No text annotation
IL_6GZX_0251/A1/1255:1262,
1/A1/1282:1286		Kink-turn
homologous
IL_7A0S_043
IL_90775.2
IL_6GZX_2731/A1/1345:1351,
1/A1/1673:1692		No text annotation
IL_6GZX_2091/A1/1354:1357,
1/A1/1653:1670		No text annotation
IL_6GZX_0281/A1/1460:1469,
1/A1/1626:1638		No text annotation
IL_6GZX_2741/A1/1470:1478,
1/A1/1612:1625		No text annotation
IL_6GZX_0291/A1/1481:1488,
1/A1/1600:1609		No text annotation
IL_6GZX_0301/A1/1489:1491,
1/A1/1598:1599		Single stack bend
geometric
IL_7KGA_003
IL_15011.2
IL_6GZX_0331/A1/1700:1705,
1/A1/2028:2030		No text annotation
homologous
IL_5J7L_304
NA
IL_6GZX_0341/A1/1712:1715,
1/A1/2018:2021		No text annotation
IL_6GZX_0351/A1/1715:1723,
1/A1/2014:2018		No text annotation
homologous
IL_4WF9_117
IL_80252.1
IL_6GZX_2751/A1/1870:1873,
1/A1/1926:1927		No text annotation
homologous
IL_4WF9_070
NA
IL_6GZX_0401/A1/1958:1969,
1/A1/1985:1988		No text annotation
homologous
IL_4WF9_077
IL_84014.1
IL_6GZX_0421/A1/2091:2093,
1/A1/2456:2457		Single bulged U
homologous
IL_7RQB_080
NA
IL_6GZX_0451/A1/2109:2112,
1/A1/2245:2248		Tandem non-canonical cWW pairs
geometric
IL_5C5W_003
NA
IL_6GZX_0501/A1/2473:2475,
1/A1/2503:2507		Major groove minor groove platform with extra cWW
homologous
IL_5J7L_337
NA
IL_6GZX_2771/A1/2524:2528,
1/A1/2584:2592		No text annotation
IL_6GZX_2781/A1/2536:2537,
1/A1/2554:2557		Major groove platform with intercalation
homologous
IL_7A0S_091
IL_94991.2
IL_6GZX_0561/A1/2694:2698,
1/A1/2740:2742		C-loop
homologous
IL_7RQB_104
NA
IL_6GZX_2801/A1/2701:2705,
1/A1/2733:2737		UAA/GAN related, with intercalation
homologous
IL_4WF9_102
IL_82016.1
IL_6GZX_2811/A1/2709:2710,
1/A1/2725:2729		Multiple bulged bases
homologous
IL_4WF9_103
IL_44609.2
IL_6GZX_2181/A1/2855:2866,
1/A1/2875:2886		No text annotation
IL_6GZX_0611/A2/35:38,
1/A2/469:473		Tandem non-canonical cWW pairs
geometric
IL_4V88_429
NA
IL_6GZX_0641/A2/229:236,
1/A2/242:248		No text annotation
IL_6GZX_2191/A2/297:316,
1/A2/374:389		No text annotation
IL_6GZX_0681/A2/721:727,
1/A2/848:857		No text annotation
IL_6GZX_0711/A2/749:756,
1/A2/773:781		No text annotation
geometric
IL_4WF9_119
NA
IL_6GZX_0721/A2/787:792,
1/A2/803:807		No text annotation
IL_6GZX_0751/A2/911:918,
1/A2/956:963		No text annotation
IL_6GZX_0761/A2/999:1001,
1/A2/1011:1012		Single stack bend
geometric
IL_4WF9_007
IL_15011.2
IL_6GZX_0771/A2/1001:1002,
1/A2/1009:1011		Single stack bend
geometric
IL_4WF9_007
IL_15011.2
IL_6GZX_0801/A2/1052:1054,
1/A2/1184:1199		No text annotation
IL_6GZX_2251/A2/1061:1082,
1/A2/1169:1197		No text annotation
IL_6GZX_0821/A2/1101:1139,
1/A2/1148:1154		No text annotation
IL_6GZX_0831/A2/1243:1248,
1/A2/1293:1298		No text annotation
IL_6GZX_0841/A2/1248:1253,
1/A2/1288:1293		No text annotation
IL_6GZX_0851/A2/1255:1262,
1/A2/1282:1286		Kink-turn
homologous
IL_7A0S_043
IL_90775.2
IL_6GZX_0871/A2/1354:1357,
1/A2/1653:1670		No text annotation
IL_6GZX_0901/A2/1460:1469,
1/A2/1626:1638		No text annotation
IL_6GZX_2841/A2/1484:1488,
1/A2/1600:1605		No text annotation
IL_6GZX_2301/A2/1700:1705,
1/A2/2028:2030		No text annotation
homologous
IL_5J7L_304
NA
IL_6GZX_1001/A2/1712:1715,
1/A2/2018:2021		No text annotation
IL_6GZX_1011/A2/1715:1723,
1/A2/2014:2018		No text annotation
homologous
IL_4WF9_117
IL_80252.1
IL_6GZX_1021/A2/1735:1740,
1/A2/1745:1751		tSH-tSH-tHH-tHS
homologous
IL_7A0S_063
IL_20700.1
IL_6GZX_1031/A2/1870:1873,
1/A2/1926:1927		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
NA
IL_6GZX_1091/A2/1958:1969,
1/A2/1985:1988		No text annotation
geometric
IL_4WF9_077
IL_84014.1
IL_6GZX_1111/A2/2077:2081,
1/A2/2625:2630		No text annotation
IL_6GZX_1121/A2/2091:2093,
1/A2/2456:2457		Single bulged U
homologous
IL_7RQB_080
NA
IL_6GZX_2861/A2/2091:2095,
1/A2/2452:2457		No text annotation
IL_6GZX_1181/A2/2467:2469,
1/A2/2510:2514		No text annotation
homologous
IL_5J7L_335
NA
IL_6GZX_1191/A2/2469:2473,
1/A2/2507:2510		No text annotation
geometric
IL_1J2B_001
IL_69301.1
IL_6GZX_1201/A2/2473:2475,
1/A2/2503:2507		No text annotation
geometric
IL_3OXE_002
IL_13785.1
IL_6GZX_1221/A2/2521:2523,
1/A2/2593:2596		No text annotation
geometric
IL_6DME_003
IL_75527.2
IL_6GZX_2871/A2/2524:2526,
1/A2/2588:2592		Isolated non-canonical cWW with bulges
homologous
IL_7A0S_089
IL_68118.3
IL_6GZX_2371/A2/2526:2528,
1/A2/2584:2588		No text annotation
IL_6GZX_2881/A2/2536:2537,
1/A2/2554:2557		Major groove platform with intercalation
homologous
IL_7A0S_091
IL_94991.2
IL_6GZX_1251/A2/2605:2606,
1/A2/2615:2617		Single bulged A
homologous
IL_7RQB_101
NA
IL_6GZX_1271/A2/2694:2698,
1/A2/2740:2742		Major groove minor groove platform with tHH
geometric
IL_4WF9_050
IL_06671.1
IL_6GZX_2901/A2/2706:2710,
1/A2/2725:2732		No text annotation
geometric
IL_9JA9_001
IL_71154.3
IL_6GZX_1291/A2/2709:2713,
1/A2/2722:2729		No text annotation
IL_6GZX_1301/A2/2849:2852,
1/A2/2889:2893		No text annotation
IL_6GZX_2911/A2/2855:2864,
1/A2/2877:2886		No text annotation
IL_6GZX_1351/A3/63:66,
1/A3/96:97		Multiple bulged bases
geometric
IL_5J7L_005
NA
IL_6GZX_2931/A3/285:288,
1/A3/299:305		No text annotation
IL_6GZX_2941/A3/362:371,
1/A3/382:388		No text annotation
IL_6GZX_1431/A3/498:504,
1/A3/511:519		Kink-turn related
geometric
IL_6CZR_133
NA
IL_6GZX_1461/A3/580:584,
1/A3/620:626		No text annotation
IL_6GZX_1501/A3/757:761,
1/A3/787:788		Left turn
homologous
IL_4LFB_032
IL_29346.3
IL_6GZX_2491/A3/757:769,
1/A3/779:788		No text annotation
IL_6GZX_1511/A3/761:768,
1/A3/780:787		No text annotation
IL_6GZX_2501/A3/809:812,
1/A3/834:851		No text annotation
IL_6GZX_2511/A3/964:1039,
1/A3/1184:1199		No text annotation
IL_6GZX_2531/A3/1223:1236,
1/A3/1263:1276		No text annotation
IL_6GZX_1591/A3/1381:1383,
1/A3/1478:1481		No text annotation
homologous
IL_4LFB_056
IL_18228.1
IL_6GZX_2541/A3/1381:1391,
1/A3/1468:1481		No text annotation
IL_6GZX_2551/A3/1398:1405,
1/A3/1454:1461		No text annotation
IL_6GZX_1641/A3/1406:1408,
1/A3/1452:1453		Single stack bend
geometric
IL_5TBW_004
NA
IL_6GZX_1651/A3/1408:1412,
1/A3/1447:1452		No text annotation
IL_6GZX_2561/A3/1408:1419,
1/A3/1441:1452		No text annotation
IL_6GZX_1671/A3/1421:1427,
1/A3/1436:1439		No text annotation
IL_6GZX_1741/A4/142:150,
1/A4/159:168		No text annotation
IL_6GZX_2991/A4/285:288,
1/A4/299:305		No text annotation
IL_6GZX_1831/A4/757:761,
1/A4/787:788		Left turn
homologous
IL_4LFB_032
IL_29346.3
IL_6GZX_1841/A4/762:768,
1/A4/780:786		No text annotation
IL_6GZX_2641/A4/809:812,
1/A4/834:851		No text annotation
IL_6GZX_1851/A4/862:872,
1/A4/881:889		No text annotation
IL_6GZX_1861/A4/924:928,
1/A4/1211:1216		No text annotation
IL_6GZX_1881/A4/1140:1145,
1/A4/1154:1162		No text annotation
IL_6GZX_1921/A4/1398:1405,
1/A4/1454:1461		No text annotation
IL_6GZX_1961/A4/1421:1427,
1/A4/1436:1439		No text annotation
IL_6GZX_2661/B2/13:71,
1/B2/110:112		No text annotation
IL_6GZX_2671/B2/71:85,
1/B2/96:110		No text annotation

Problematic loops

#loop idProblemSequence
IL_6GZX_001No text annotation
IL_6GZX_268Kink-turn
IL_6GZX_003No text annotation
IL_6GZX_200No text annotation
IL_6GZX_005Single stack bend
IL_6GZX_201No text annotation
IL_6GZX_009No text annotation
IL_6GZX_202No text annotation
IL_6GZX_0115x5 Sarcin-Ricin with intercalated A; G-bulge
IL_6GZX_012No text annotation
IL_6GZX_017Isolated non-canonical cWW pair
IL_6GZX_204No text annotation
IL_6GZX_205No text annotation
IL_6GZX_018No text annotation
IL_6GZX_206No text annotation
IL_6GZX_019Single bulged U
IL_6GZX_021No text annotation
IL_6GZX_024No text annotation
IL_6GZX_271No text annotation
IL_6GZX_207Partly complementary
IL_6GZX_026Single bulged A
IL_6GZX_272No text annotation
IL_6GZX_208No text annotation
IL_6GZX_027Single stack bend
IL_6GZX_210No text annotation
IL_6GZX_031Single base bend
IL_6GZX_032No text annotation
IL_6GZX_211No text annotation
IL_6GZX_036No text annotation
IL_6GZX_037Isolated non-canonical cWW pair
IL_6GZX_276Major groove intercalation
IL_6GZX_038No text annotation
IL_6GZX_039Bulged stacked bases
IL_6GZX_212No text annotation
IL_6GZX_041Major groove platform
IL_6GZX_213No text annotation
IL_6GZX_043Minor groove platform
IL_6GZX_214Tandem non-canonical cWW pairs
IL_6GZX_044Triple non-canonical cWW pairs
IL_6GZX_046No text annotation
IL_6GZX_047No text annotation
IL_6GZX_048Isolated cWH basepair
IL_6GZX_049Major groove platform
IL_6GZX_051No text annotation
IL_6GZX_052No text annotation
IL_6GZX_053No text annotation
IL_6GZX_054Single bulged A
IL_6GZX_215Partly complementary
IL_6GZX_279Isolated non-canonical cWW pair
IL_6GZX_055No text annotation
IL_6GZX_216No text annotation
IL_6GZX_217No text annotation
IL_6GZX_057No text annotation
IL_6GZX_058No text annotation
IL_6GZX_282No text annotation
IL_6GZX_059No text annotation
IL_6GZX_060Major groove platform with intercalation
IL_6GZX_062No text annotation
IL_6GZX_063No text annotation
IL_6GZX_283Kink-turn
IL_6GZX_065No text annotation
IL_6GZX_066Single stack bend
IL_6GZX_067No text annotation
IL_6GZX_220No text annotation
IL_6GZX_069Single stack bend
IL_6GZX_070Single bulged A
IL_6GZX_221No text annotation
IL_6GZX_073No text annotation
IL_6GZX_0745x5 Sarcin-Ricin with intercalated A; G-bulge
IL_6GZX_222No text annotation
IL_6GZX_078Other IL
IL_6GZX_079No text annotation
IL_6GZX_223No text annotation
IL_6GZX_224Single bulged U
IL_6GZX_081No text annotation
IL_6GZX_086Isolated cWS basepair
IL_6GZX_226Partly complementary
IL_6GZX_088No text annotation
IL_6GZX_227No text annotation
IL_6GZX_089tSH-tHW-tHS
IL_6GZX_091No text annotation
IL_6GZX_092No text annotation
IL_6GZX_228No text annotation
IL_6GZX_093No text annotation
IL_6GZX_285Single stack bend
IL_6GZX_094No text annotation
IL_6GZX_095No text annotation
IL_6GZX_096Single stack bend
IL_6GZX_229No text annotation
IL_6GZX_097No text annotation
IL_6GZX_098No text annotation
IL_6GZX_099No text annotation
IL_6GZX_231Isolated non-canonical cWW pair
IL_6GZX_104Major groove intercalation
IL_6GZX_232No text annotation
IL_6GZX_105No text annotation
IL_6GZX_106UAA/GAN with extra stack
IL_6GZX_107No text annotation
IL_6GZX_108Bulged stacked bases
IL_6GZX_233No text annotation
IL_6GZX_110Major groove platform
IL_6GZX_234No text annotation
IL_6GZX_113Minor groove platform
IL_6GZX_114Triple non-canonical cWW pairs
IL_6GZX_235No text annotation
IL_6GZX_115No text annotation
IL_6GZX_116Single stack bend
IL_6GZX_117Double sheared
IL_6GZX_121Triple sheared
IL_6GZX_236No text annotation
IL_6GZX_123No text annotation
IL_6GZX_124No text annotation
IL_6GZX_126No text annotation
IL_6GZX_238No text annotation
IL_6GZX_128No text annotation
IL_6GZX_289UAA/GAN related, with intercalation
IL_6GZX_239No text annotation
IL_6GZX_240No text annotation
IL_6GZX_131Single stack bend
IL_6GZX_132Tandem non-canonical cWW pairs
IL_6GZX_133Single bulged A
IL_6GZX_134No text annotation
IL_6GZX_136Tandem non-canonical cWW pairs
IL_6GZX_137No text annotation
IL_6GZX_292Tandem non-canonical cWW pairs
IL_6GZX_241No text annotation
IL_6GZX_138Isolated non-canonical cWW pair
IL_6GZX_242No text annotation
IL_6GZX_139No text annotation
IL_6GZX_140No text annotation
IL_6GZX_243No text annotation
IL_6GZX_141No text annotation
IL_6GZX_295No text annotation
IL_6GZX_244No text annotation
IL_6GZX_245No text annotation
IL_6GZX_142Tandem non-canonical cWW pairs
IL_6GZX_246No text annotation
IL_6GZX_144No text annotation
IL_6GZX_296No text annotation
IL_6GZX_145No text annotation
IL_6GZX_147No text annotation
IL_6GZX_247No text annotation
IL_6GZX_148Single stack bend
IL_6GZX_248No text annotation
IL_6GZX_149No text annotation
IL_6GZX_152Single stack bend
IL_6GZX_153No text annotation
IL_6GZX_154No text annotation
IL_6GZX_155No text annotation
IL_6GZX_156No text annotation
IL_6GZX_252No text annotation
IL_6GZX_157No text annotation
IL_6GZX_158Double sheared with non-canonical cWW
IL_6GZX_160No text annotation
IL_6GZX_161No text annotation
IL_6GZX_162Partly complementary
IL_6GZX_163No text annotation
IL_6GZX_166No text annotation
IL_6GZX_168No text annotation
IL_6GZX_297Tandem non-canonical cWW pairs
IL_6GZX_169Single bulged A
IL_6GZX_170No text annotation
IL_6GZX_171Multiple bulged bases
IL_6GZX_172Multiple bulged bases
IL_6GZX_173No text annotation
IL_6GZX_298No text annotation
IL_6GZX_257No text annotation
IL_6GZX_175No text annotation
IL_6GZX_258No text annotation
IL_6GZX_1766x5 Sarcin-Ricin; G-bulge
IL_6GZX_177No text annotation
IL_6GZX_259No text annotation
IL_6GZX_178No text annotation
IL_6GZX_260No text annotation
IL_6GZX_179No text annotation
IL_6GZX_261tSH-tHW-tHS
IL_6GZX_180No text annotation
IL_6GZX_300No text annotation
IL_6GZX_181No text annotation
IL_6GZX_182No text annotation
IL_6GZX_262No text annotation
IL_6GZX_301No text annotation
IL_6GZX_263Other IL
IL_6GZX_187No text annotation
IL_6GZX_189No text annotation
IL_6GZX_265No text annotation
IL_6GZX_190No text annotation
IL_6GZX_191Partly complementary
IL_6GZX_193Single stack bend
IL_6GZX_302No text annotation
IL_6GZX_194No text annotation
IL_6GZX_195No text annotation
IL_6GZX_197Symmetric double minor groove platform
IL_6GZX_198No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6GZX_0011/A1/53:56,
1/A1/69:75,
1/A1/108:114		No text annotation
J3_6GZX_0591/A1/54:56,
1/A1/69:76,
1/A1/107:113		No text annotation
J3_6GZX_0611/A1/626:656,
1/A1/662:666,
1/A1/676:705		No text annotation
J3_6GZX_0031/A1/746:749,
1/A1/781:787,
1/A1/807:814		No text annotation
J3_6GZX_0251/A1/746:756,
1/A1/773:787,
1/A1/807:814		No text annotation
J3_6GZX_0051/A1/1354:1357,
1/A1/1653:1659,
1/A1/1668:1670		No text annotation
homologous
J3_5J7L_042
NA
J3_6GZX_0621/A1/1392:1398,
1/A1/1429:1433,
1/A1/1450:1451		No text annotation
homologous
J3_4WF9_016
J3_94309.1
J3_6GZX_0271/A1/1800:1809,
1/A1/1821:1864,
1/A1/1998:2009		No text annotation
J3_6GZX_0281/A1/2105:2118,
1/A1/2219:2224,
1/A1/2237:2253		No text annotation
J3_6GZX_0291/A1/2309:2315,
1/A1/2329:2338,
1/A1/2345:2351		No text annotation
J3_6GZX_0631/A1/2529:2534,
1/A1/2559:2561,
1/A1/2575:2583		No text annotation
J3_6GZX_0071/A1/2531:2534,
1/A1/2559:2561,
1/A1/2575:2581		No text annotation
homologous
J3_4WF9_009
J3_32601.6
J3_6GZX_0641/A1/2826:2827,
1/A1/2843:2852,
1/A1/2889:2898		No text annotation
J3_6GZX_0651/A2/24:32,
1/A2/501:512,
1/A2/523:543		No text annotation
J3_6GZX_0331/A2/32:35,
1/A2/473:489,
1/A2/496:501		No text annotation
homologous
J3_4WF9_012
J3_07616.1
J3_6GZX_0351/A2/288:296,
1/A2/390:405,
1/A2/426:432		No text annotation
J3_6GZX_0081/A2/731:740,
1/A2/820:828,
1/A2/834:845		No text annotation
J3_6GZX_0091/A2/747:749,
1/A2/781:787,
1/A2/807:812		No text annotation
J3_6GZX_0381/A2/747:756,
1/A2/773:787,
1/A2/807:812		No text annotation
J3_6GZX_0681/A2/1392:1403,
1/A2/1424:1433,
1/A2/1450:1451		No text annotation
J3_6GZX_0691/A2/1470:1478,
1/A2/1612:1614,
1/A2/1617:1625		No text annotation
J3_6GZX_0711/A2/2530:2534,
1/A2/2559:2561,
1/A2/2575:2582		No text annotation
J3_6GZX_0121/A2/2531:2534,
1/A2/2559:2561,
1/A2/2575:2581		No text annotation
homologous
J3_7RQB_012
NA
J3_6GZX_0721/A2/2824:2827,
1/A2/2843:2852,
1/A2/2889:2900		No text annotation
J3_6GZX_0731/A3/46:52,
1/A3/354:362,
1/A3/388:390		No text annotation
homologous
J3_4LFB_014
J3_63856.1
J3_6GZX_0161/A3/809:812,
1/A3/834:839,
1/A3/844:851		No text annotation
J3_6GZX_0491/A3/909:916,
1/A3/1325:1333,
1/A3/1352:1367		No text annotation
J3_6GZX_0751/A3/1043:1051,
1/A3/1088:1102,
1/A3/1135:1176		No text annotation
J3_6GZX_0761/A4/46:52,
1/A4/354:372,
1/A4/381:390		No text annotation
J3_6GZX_0771/A4/569:572,
1/A4/633:660,
1/A4/696:738		No text annotation
J3_6GZX_0191/A4/809:812,
1/A4/834:839,
1/A4/844:851		No text annotation
J3_6GZX_0541/A4/907:916,
1/A4/1325:1333,
1/A4/1352:1369		No text annotation
J3_6GZX_0201/A4/918:924,
1/A4/1216:1218,
1/A4/1318:1323		No text annotation
J3_6GZX_0551/A4/964:986,
1/A4/999:1032,
1/A4/1189:1199		No text annotation
J3_6GZX_0561/A4/1218:1234,
1/A4/1265:1291,
1/A4/1308:1318		No text annotation
J3_6GZX_0581/B2/13:40,
1/B2/46:71,
1/B2/110:112		No text annotation
J4_6GZX_0011/A1/24:38,
1/A1/469:489,
1/A1/496:512,
1/A1/523:543		No text annotation
J4_6GZX_0261/A1/258:266,
1/A1/280:288,
1/A1/432:434,
1/A1/450:453		No text annotation
J4_6GZX_0271/A1/322:327,
1/A1/340:344,
1/A1/348:350,
1/A1/362:366		No text annotation
J4_6GZX_0281/A1/1358:1363,
1/A1/1385:1391,
1/A1/1452:1456,
1/A1/1642:1652		No text annotation
J4_6GZX_0061/A1/1723:1731,
1/A1/1755:1757,
1/A1/1783:1797,
1/A1/2012:2014		No text annotation
J4_6GZX_0291/A1/1865:1868,
1/A1/1929:1930,
1/A1/1948:1957,
1/A1/1991:1997		No text annotation
J4_6GZX_0081/A1/2299:2307,
1/A1/2354:2362,
1/A1/2383:2386,
1/A1/2395:2398		No text annotation
J4_6GZX_0091/A1/2657:2660,
1/A1/2688:2690,
1/A1/2746:2750,
1/A1/2784:2786		No text annotation
homologous
J4_9DFE_010
J4_77044.5
J4_6GZX_0301/A2/1357:1363,
1/A2/1385:1391,
1/A2/1452:1454,
1/A2/1644:1653		No text annotation
J4_6GZX_0311/A2/1492:1494,
1/A2/1515:1524,
1/A2/1566:1574,
1/A2/1595:1596		No text annotation
J4_6GZX_0141/A2/1799:1809,
1/A2/1821:1830,
1/A2/1855:1864,
1/A2/1998:2010		No text annotation
J4_6GZX_0321/A2/1865:1873,
1/A2/1926:1930,
1/A2/1948:1957,
1/A2/1991:1997		No text annotation
J4_6GZX_0161/A2/2299:2307,
1/A2/2354:2362,
1/A2/2383:2386,
1/A2/2395:2398		No text annotation
J4_6GZX_0181/A3/106:125,
1/A3/226:235,
1/A3/281:284,
1/A3/306:309		No text annotation
J4_6GZX_0191/A3/126:139,
1/A3/171:178,
1/A3/199:204,
1/A3/214:225		No text annotation
J4_6GZX_0331/A3/920:923,
1/A3/1216:1222,
1/A3/1277:1290,
1/A3/1309:1321		No text annotation
J4_6GZX_0341/A4/58:61,
1/A4/99:106,
1/A4/309:334,
1/A4/345:349		No text annotation
J4_6GZX_0221/A4/106:120,
1/A4/229:235,
1/A4/281:284,
1/A4/306:309		No text annotation
J4_6GZX_0231/A4/126:138,
1/A4/171:178,
1/A4/199:204,
1/A4/214:225		No text annotation
J4_6GZX_0241/A4/918:939,
1/A4/950:964,
1/A4/1199:1218,
1/A4/1318:1323		No text annotation
J4_6GZX_0251/A4/1043:1056,
1/A4/1065:1069,
1/A4/1080:1102,
1/A4/1135:1176		No text annotation
J5_6GZX_0011/A1/46:53,
1/A1/114:121,
1/A1/126:129,
1/A1/148:153,
1/A1/163:168		No text annotation
J5_6GZX_0021/A1/258:266,
1/A1/280:291,
1/A1/396:406,
1/A1/424:435,
1/A1/449:453		No text annotation
J5_6GZX_0161/A1/609:614,
1/A1/717:720,
1/A1/858:863,
1/A1/1240:1248,
1/A1/1293:1304		No text annotation
J5_6GZX_0171/A1/2077:2089,
1/A1/2459:2473,
1/A1/2507:2521,
1/A1/2596:2602,
1/A1/2620:2630		No text annotation
J5_6GZX_0051/A2/46:53,
1/A2/114:121,
1/A2/126:129,
1/A2/148:150,
1/A2/166:168		No text annotation
J5_6GZX_0061/A2/258:266,
1/A2/280:296,
1/A2/390:405,
1/A2/426:435,
1/A2/449:453		No text annotation
J5_6GZX_0181/A2/558:560,
1/A2/585:604,
1/A2/1309:1345,
1/A2/1692:1697,
1/A2/2033:2042		No text annotation
J5_6GZX_0081/A2/608:614,
1/A2/717:721,
1/A2/857:863,
1/A2/1240:1248,
1/A2/1293:1305		No text annotation
J5_6GZX_0191/A2/1723:1731,
1/A2/1755:1758,
1/A2/1782:1785,
1/A2/1789:1797,
1/A2/2012:2014		No text annotation
J5_6GZX_0201/A2/2081:2088,
1/A2/2460:2475,
1/A2/2503:2521,
1/A2/2596:2602,
1/A2/2620:2625		No text annotation
J5_6GZX_0221/A3/58:61,
1/A3/99:106,
1/A3/309:312,
1/A3/331:334,
1/A3/345:349		No text annotation
J5_6GZX_0231/A3/800:806,
1/A3/854:907,
1/A3/1369:1381,
1/A3/1481:1484,
1/A3/1505:1506		No text annotation
J5_6GZX_0241/A3/800:806,
1/A3/854:907,
1/A3/1369:1391,
1/A3/1468:1484,
1/A3/1505:1506		No text annotation
J5_6GZX_0251/A4/36:43,
1/A4/394:401,
1/A4/431:438,
1/A4/474:483,
1/A4/528:531		No text annotation
J6_6GZX_0081/A1/40:46,
1/A1/168:174,
1/A1/202:215,
1/A1/220:227,
1/A1/250:256,
1/A1/455:467		No text annotation
J6_6GZX_0091/A1/558:560,
1/A1/585:605,
1/A1/1308:1325,
1/A1/1341:1345,
1/A1/1692:1697,
1/A1/2033:2042		No text annotation
J6_6GZX_0101/A1/866:871,
1/A1/884:886,
1/A1/989:993,
1/A1/1018:1040,
1/A1/1210:1217,
1/A1/1227:1237		No text annotation
J6_6GZX_0111/A1/2098:2101,
1/A1/2257:2260,
1/A1/2272:2273,
1/A1/2295:2299,
1/A1/2398:2411,
1/A1/2433:2449		No text annotation
J6_6GZX_0121/A2/40:46,
1/A2/168:174,
1/A2/202:214,
1/A2/221:226,
1/A2/251:256,
1/A2/455:467		No text annotation
J6_6GZX_0061/A2/866:871,
1/A2/884:890,
1/A2/984:993,
1/A2/1018:1026,
1/A2/1033:1040,
1/A2/1210:1237		No text annotation
J6_6GZX_0131/A2/2097:2102,
1/A2/2256:2260,
1/A2/2272:2273,
1/A2/2295:2299,
1/A2/2398:2410,
1/A2/2434:2450		No text annotation

Problematic loops

#loop idProblemSequence
J3_6GZX_022No text annotation
J3_6GZX_002No text annotation
J3_6GZX_060No text annotation
J3_6GZX_023No text annotation
J3_6GZX_024No text annotation
J3_6GZX_004No text annotation
J3_6GZX_026No text annotation
J3_6GZX_006No text annotation
J3_6GZX_030No text annotation
J3_6GZX_031No text annotation
J3_6GZX_032No text annotation
J3_6GZX_034No text annotation
J3_6GZX_036No text annotation
J3_6GZX_066No text annotation
J3_6GZX_037No text annotation
J3_6GZX_010No text annotation
J3_6GZX_067No text annotation
J3_6GZX_039No text annotation
J3_6GZX_040No text annotation
J3_6GZX_041No text annotation
J3_6GZX_011No text annotation
J3_6GZX_070No text annotation
J3_6GZX_042No text annotation
J3_6GZX_043No text annotation
J3_6GZX_013No text annotation
J3_6GZX_044No text annotation
J3_6GZX_045No text annotation
J3_6GZX_014No text annotation
J3_6GZX_046No text annotation
J3_6GZX_047No text annotation
J3_6GZX_015No text annotation
J3_6GZX_074No text annotation
J3_6GZX_048No text annotation
J3_6GZX_050No text annotation
J3_6GZX_051No text annotation
J3_6GZX_017No text annotation
J3_6GZX_052No text annotation
J3_6GZX_053No text annotation
J3_6GZX_018No text annotation
J3_6GZX_021No text annotation
J3_6GZX_057No text annotation
J4_6GZX_002No text annotation
J4_6GZX_003No text annotation
J4_6GZX_004No text annotation
J4_6GZX_005No text annotation
J4_6GZX_007No text annotation
J4_6GZX_010No text annotation
J4_6GZX_011No text annotation
J4_6GZX_012No text annotation
J4_6GZX_013No text annotation
J4_6GZX_015No text annotation
J4_6GZX_017No text annotation
J4_6GZX_020No text annotation
J4_6GZX_021No text annotation
J5_6GZX_003No text annotation
J5_6GZX_004No text annotation
J5_6GZX_007No text annotation
J5_6GZX_009No text annotation
J5_6GZX_010No text annotation
J5_6GZX_021No text annotation
J5_6GZX_011No text annotation
J5_6GZX_012No text annotation
J5_6GZX_013No text annotation
J5_6GZX_014No text annotation
J5_6GZX_015No text annotation
J6_6GZX_001No text annotation
J6_6GZX_002No text annotation
J6_6GZX_003No text annotation
J6_6GZX_004No text annotation
J6_6GZX_005No text annotation
J6_6GZX_007No text annotation

Coloring options:
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