HL_6GZX_014

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

6GZX|1|A1|G|439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_014 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.2693

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

6GZX|1|A1|G|438
6GZX|1|A1|G|439
6GZX|1|A1|A|440
6GZX|1|A1|C|441
6GZX|1|A1|C|442
6GZX|1|A1|A|443
6GZX|1|A1|C|444
6GZX|1|A1|C|445

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain K1

50S ribosomal protein L15