HL_6GZX_025

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

6GZX|1|A1|U|1005, 6GZX|1|A1|C|1008

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_025 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.3972

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6GZX|1|A1|C|1002
6GZX|1|A1|G|1003
6GZX|1|A1|A|1004
6GZX|1|A1|U|1005
6GZX|1|A1|A|1006
6GZX|1|A1|A|1007
6GZX|1|A1|C|1008
6GZX|1|A1|G|1009

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain B1

5S ribosomal RNA; 5S rRNA

Chain L1

50S ribosomal protein L16

Chain V1

50S ribosomal protein L27