HL_6GZX_033

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases

6GZX|1|A1|U|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_033 not in the Motif Atlas

Geometric match to HL_4V9F_004

Geometric discrepancy: 0.3619

The information below is about HL_4V9F_004

Detailed Annotation

Mini UNCG related

Broad Annotation

Mini UNCG related

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

6GZX|1|A1|C|1501
6GZX|1|A1|A|1502
6GZX|1|A1|U|1503
6GZX|1|A1|G|1504
6GZX|1|A1|G|1505
6GZX|1|A1|A|1506
6GZX|1|A1|C|1507
6GZX|1|A1|G|1508

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain M1

50S ribosomal protein L17