HL_6GZX_037

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GCAAGAGC

Length

8 nucleotides

Bulged bases

6GZX|1|A1|A|1683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_037 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2604

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6GZX|1|A1|G|1678
6GZX|1|A1|C|1679
6GZX|1|A1|A|1680
6GZX|1|A1|A|1681
6GZX|1|A1|G|1682
6GZX|1|A1|A|1683
6GZX|1|A1|G|1684
6GZX|1|A1|C|1685

Current chains

Chain A1

23S ribosomal RNA

Nearby chains