HL_6GZX_046

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

UUGGUCGCGCCUGCGUAGGAUAGGUGGGAGCCUGUGAACCCCCGCCUCCGGGUGGGGGGGAGGCGCCGGUGAAAUACCACCCUGGCGCGGCUGG

Length

94 nucleotides

Bulged bases

6GZX|1|A1|U|2126, 6GZX|1|A1|C|2127, 6GZX|1|A1|G|2147, 6GZX|1|A1|G|2155, 6GZX|1|A1|U|2156, 6GZX|1|A1|G|2157, 6GZX|1|A1|C|2163, 6GZX|1|A1|G|2165, 6GZX|1|A1|G|2175, 6GZX|1|A1|G|2180, 6GZX|1|A1|G|2183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A1|U|2122
6GZX|1|A1|U|2123
6GZX|1|A1|G|2124
6GZX|1|A1|G|2125
6GZX|1|A1|U|2126
6GZX|1|A1|C|2127
6GZX|1|A1|G|2128
6GZX|1|A1|C|2129
6GZX|1|A1|G|2130
6GZX|1|A1|C|2131
6GZX|1|A1|C|2132
6GZX|1|A1|U|2133
6GZX|1|A1|G|2134
6GZX|1|A1|C|2135
6GZX|1|A1|G|2136
6GZX|1|A1|U|2137
6GZX|1|A1|A|2138
6GZX|1|A1|G|2139
6GZX|1|A1|G|2140
6GZX|1|A1|A|2141
6GZX|1|A1|U|2142
6GZX|1|A1|A|2143
6GZX|1|A1|G|2144
6GZX|1|A1|G|2145
6GZX|1|A1|U|2146
6GZX|1|A1|G|2147
6GZX|1|A1|G|2148
6GZX|1|A1|G|2149
6GZX|1|A1|A|2150
6GZX|1|A1|G|2151
6GZX|1|A1|C|2152
6GZX|1|A1|C|2153
6GZX|1|A1|U|2154
6GZX|1|A1|G|2155
6GZX|1|A1|U|2156
6GZX|1|A1|G|2157
6GZX|1|A1|A|2158
6GZX|1|A1|A|2159
6GZX|1|A1|C|2160
6GZX|1|A1|C|2161
6GZX|1|A1|C|2162
6GZX|1|A1|C|2163
6GZX|1|A1|C|2164
6GZX|1|A1|G|2165
6GZX|1|A1|C|2166
6GZX|1|A1|C|2167
6GZX|1|A1|U|2168
6GZX|1|A1|C|2169
6GZX|1|A1|C|2170
6GZX|1|A1|G|2171
6GZX|1|A1|G|2172
6GZX|1|A1|G|2173
6GZX|1|A1|U|2174
6GZX|1|A1|G|2175
6GZX|1|A1|G|2176
6GZX|1|A1|G|2177
6GZX|1|A1|G|2178
6GZX|1|A1|G|2179
6GZX|1|A1|G|2180
6GZX|1|A1|G|2181
6GZX|1|A1|A|2182
6GZX|1|A1|G|2183
6GZX|1|A1|G|2184
6GZX|1|A1|C|2185
6GZX|1|A1|G|2186
6GZX|1|A1|C|2187
6GZX|1|A1|C|2188
6GZX|1|A1|G|2189
6GZX|1|A1|G|2190
6GZX|1|A1|U|2191
6GZX|1|A1|G|2192
6GZX|1|A1|A|2193
6GZX|1|A1|A|2194
6GZX|1|A1|A|2195
6GZX|1|A1|U|2196
6GZX|1|A1|A|2197
6GZX|1|A1|C|2198
6GZX|1|A1|C|2199
6GZX|1|A1|A|2200
6GZX|1|A1|C|2201
6GZX|1|A1|C|2202
6GZX|1|A1|C|2203
6GZX|1|A1|U|2204
6GZX|1|A1|G|2205
6GZX|1|A1|G|2206
6GZX|1|A1|C|2207
6GZX|1|A1|G|2208
6GZX|1|A1|C|2209
6GZX|1|A1|G|2210
6GZX|1|A1|G|2211
6GZX|1|A1|C|2212
6GZX|1|A1|U|2213
6GZX|1|A1|G|2214
6GZX|1|A1|G|2215

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain H1

50S ribosomal protein L9

Chain J4

30S ribosomal protein S10