HL_6GZX_047

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CCUCGGAUGGGG

Length

12 nucleotides

Bulged bases

6GZX|1|A1|G|2229, 6GZX|1|A1|G|2230, 6GZX|1|A1|U|2232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_047 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.1609

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6GZX|1|A1|C|2225
6GZX|1|A1|C|2226
6GZX|1|A1|U|2227
6GZX|1|A1|C|2228
6GZX|1|A1|G|2229
6GZX|1|A1|G|2230
6GZX|1|A1|A|2231
6GZX|1|A1|U|2232
6GZX|1|A1|G|2233
6GZX|1|A1|G|2234
6GZX|1|A1|G|2235
6GZX|1|A1|G|2236

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L2

Chain H1

50S ribosomal protein L9

Chain W1

50S ribosomal protein L28