HL_6GZX_054

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CCGUGUGGAAGG

Length

12 nucleotides

Bulged bases

6GZX|1|A1|U|2420

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_054 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3819

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6GZX|1|A1|C|2417
6GZX|1|A1|C|2418
6GZX|1|A1|G|2419
6GZX|1|A1|U|2420
6GZX|1|A1|G|2421
6GZX|1|A1|U|2422
6GZX|1|A1|G|2423
6GZX|1|A1|G|2424
6GZX|1|A1|A|2425
6GZX|1|A1|A|2426
6GZX|1|A1|G|2427
6GZX|1|A1|G|2428

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain K1

50S ribosomal protein L15

Chain W1

50S ribosomal protein L28