HL_6GZX_091

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_091 not in the Motif Atlas

Homologous match to HL_7RQB_028

Geometric discrepancy: 0.2718

The information below is about HL_7RQB_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6GZX|1|A2|G|1026
6GZX|1|A2|G|1027
6GZX|1|A2|A|1028
6GZX|1|A2|A|1029
6GZX|1|A2|C|1030
6GZX|1|A2|A|1031
6GZX|1|A2|A|1032
6GZX|1|A2|C|1033

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain P2

50S ribosomal protein L20