HL_6GZX_092

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

6GZX|1|A2|G|1141, 6GZX|1|A2|U|1142, 6GZX|1|A2|A|1143, 6GZX|1|A2|A|1146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_092 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3675

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6GZX|1|A2|G|1139
6GZX|1|A2|C|1140
6GZX|1|A2|G|1141
6GZX|1|A2|U|1142
6GZX|1|A2|A|1143
6GZX|1|A2|A|1144
6GZX|1|A2|U|1145
6GZX|1|A2|A|1146
6GZX|1|A2|G|1147
6GZX|1|A2|C|1148

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain G2

50S ribosomal protein L6

Chain e2

50S ribosomal protein L36