HL_6GZX_097

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_097 not in the Motif Atlas

Homologous match to HL_7A0S_034

Geometric discrepancy: 0.1543

The information below is about HL_7A0S_034

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6GZX|1|A2|C|1411
6GZX|1|A2|G|1412
6GZX|1|A2|A|1413
6GZX|1|A2|A|1414
6GZX|1|A2|A|1415
6GZX|1|A2|G|1416

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain W2

50S ribosomal protein L28

Chain c2

50S ribosomal protein L34