HL_6GZX_098

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6GZX|1|A2|U|1444, 6GZX|1|A2|U|1445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_098 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.5374

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6GZX|1|A2|G|1437
6GZX|1|A2|U|1438
6GZX|1|A2|U|1439
6GZX|1|A2|A|1440
6GZX|1|A2|A|1441
6GZX|1|A2|U|1442
6GZX|1|A2|A|1443
6GZX|1|A2|U|1444
6GZX|1|A2|U|1445
6GZX|1|A2|C|1446

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain S2

50S ribosomal protein L23