HL_6GZX_104

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6GZX|1|A2|U|1742

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_104 not in the Motif Atlas

Geometric match to HL_5ML7_002

Geometric discrepancy: 0.284

The information below is about HL_5ML7_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

6GZX|1|A2|C|1740
6GZX|1|A2|U|1741
6GZX|1|A2|U|1742
6GZX|1|A2|C|1743
6GZX|1|A2|G|1744
6GZX|1|A2|G|1745

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain A4

Small subunit ribosomal RNA; SSU rRNA

Chain C2

50S ribosomal protein L2