HL_6GZX_108

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CUGCGAACUCGUAAGAGGAGGUAUAG

Length

26 nucleotides

Bulged bases

6GZX|1|A2|G|1834, 6GZX|1|A2|G|1849, 6GZX|1|A2|U|1853

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|C|1830
6GZX|1|A2|U|1831
6GZX|1|A2|G|1832
6GZX|1|A2|C|1833
6GZX|1|A2|G|1834
6GZX|1|A2|A|1835
6GZX|1|A2|A|1836
6GZX|1|A2|C|1837
6GZX|1|A2|U|1838
6GZX|1|A2|C|1839
6GZX|1|A2|G|1840
6GZX|1|A2|U|1841
6GZX|1|A2|A|1842
6GZX|1|A2|A|1843
6GZX|1|A2|G|1844
6GZX|1|A2|A|1845
6GZX|1|A2|G|1846
6GZX|1|A2|G|1847
6GZX|1|A2|A|1848
6GZX|1|A2|G|1849
6GZX|1|A2|G|1850
6GZX|1|A2|U|1851
6GZX|1|A2|A|1852
6GZX|1|A2|U|1853
6GZX|1|A2|A|1854
6GZX|1|A2|G|1855

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain A4

Small subunit ribosomal RNA; SSU rRNA

Chain C2

50S ribosomal protein L2

Chain W2

50S ribosomal protein L28