HL_6GZX_116

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6GZX|1|A2|A|2282, 6GZX|1|A2|C|2289

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_116 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.2933

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

6GZX|1|A2|C|2278
6GZX|1|A2|U|2279
6GZX|1|A2|A|2280
6GZX|1|A2|A|2281
6GZX|1|A2|A|2282
6GZX|1|A2|A|2283
6GZX|1|A2|G|2284
6GZX|1|A2|G|2285
6GZX|1|A2|U|2286
6GZX|1|A2|A|2287
6GZX|1|A2|A|2288
6GZX|1|A2|C|2289
6GZX|1|A2|G|2290

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain L2

50S ribosomal protein L16

Chain V2

50S ribosomal protein L27