HL_6GZX_132

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GUUUGAUCCUGGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_132 not in the Motif Atlas

Homologous match to HL_5J7L_001

Geometric discrepancy: 0.473

The information below is about HL_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.5

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6GZX|1|A3|G|11
6GZX|1|A3|U|12
6GZX|1|A3|U|13
6GZX|1|A3|U|14
6GZX|1|A3|G|15
6GZX|1|A3|A|16
6GZX|1|A3|U|17
6GZX|1|A3|C|18
6GZX|1|A3|C|19
6GZX|1|A3|U|20
6GZX|1|A3|G|21
6GZX|1|A3|G|22
6GZX|1|A3|C|23

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain E3

30S ribosomal protein S5

Chain L3

30S ribosomal protein S12