HL_6GZX_135

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CCCUUGGG

Length

8 nucleotides

Bulged bases

6GZX|1|A3|U|188, 6GZX|1|A3|U|189, 6GZX|1|A3|G|190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_135 not in the Motif Atlas

Homologous match to HL_4LFB_004

Geometric discrepancy: 0.4364

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

6GZX|1|A3|C|185
6GZX|1|A3|C|186
6GZX|1|A3|C|187
6GZX|1|A3|U|188
6GZX|1|A3|U|189
6GZX|1|A3|G|190
6GZX|1|A3|G|191
6GZX|1|A3|G|192

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain Q3

30S ribosomal protein S17

Chain T3

30S ribosomal protein S20