HL_6GZX_138
3D structure
- PDB id
- 6GZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (ice)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.57 Å
Loop
- Sequence
- CUGAGAGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GZX_138 not in the Motif Atlas
- Geometric match to HL_6DN2_001
- Geometric discrepancy: 0.3798
- The information below is about HL_6DN2_001
- Detailed Annotation
- T-loop with 2 bulged bases not stacked
- Broad Annotation
- T-loop
- Motif group
- HL_13999.3
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
6GZX|1|A3|C|290
6GZX|1|A3|U|291
6GZX|1|A3|G|292
6GZX|1|A3|A|293
6GZX|1|A3|G|294
6GZX|1|A3|A|295
6GZX|1|A3|G|296
6GZX|1|A3|G|297
Current chains
- Chain A3
- 16S ribosomal RNA
Nearby chains
- Chain D3
- 30S ribosomal protein S4
- Chain E3
- 30S ribosomal protein S5
- Chain L3
- 30S ribosomal protein S12
- Chain Q3
- 30S ribosomal protein S17
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