HL_6GZX_140

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

6GZX|1|A3|A|339

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_140 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.4377

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

6GZX|1|A3|C|337
6GZX|1|A3|U|338
6GZX|1|A3|A|339
6GZX|1|A3|C|340
6GZX|1|A3|G|341
6GZX|1|A3|G|342

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain J1

50S ribosomal protein L14

Chain O1

50S ribosomal protein L19