HL_6GZX_170

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GGCGCAAGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_170 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.355

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6GZX|1|A4|G|372
6GZX|1|A4|G|373
6GZX|1|A4|C|374
6GZX|1|A4|G|375
6GZX|1|A4|C|376
6GZX|1|A4|A|377
6GZX|1|A4|A|378
6GZX|1|A4|G|379
6GZX|1|A4|C|380
6GZX|1|A4|C|381

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain P4

30S ribosomal protein S16