HL_6GZX_173

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_173 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3727

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6GZX|1|A4|C|505
6GZX|1|A4|A|506
6GZX|1|A4|G|507
6GZX|1|A4|C|508
6GZX|1|A4|C|509
6GZX|1|A4|G|510

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain L4

30S ribosomal protein S12