HL_6GZX_176

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GCGAAGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_176 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3534

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6GZX|1|A4|G|708
6GZX|1|A4|C|709
6GZX|1|A4|G|710
6GZX|1|A4|A|711
6GZX|1|A4|A|712
6GZX|1|A4|G|713
6GZX|1|A4|G|714
6GZX|1|A4|C|715

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain O4

30S ribosomal protein S15

Chain R4

30S ribosomal protein S18