HL_6GZX_187

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GCGAUGCCACCCGGCAACGGGGAGCUAAUCGC

Length

32 nucleotides

Bulged bases

6GZX|1|A4|A|1237, 6GZX|1|A4|U|1238, 6GZX|1|A4|C|1248, 6GZX|1|A4|U|1259, 6GZX|1|A4|A|1261

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A4|G|1234
6GZX|1|A4|C|1235
6GZX|1|A4|G|1236
6GZX|1|A4|A|1237
6GZX|1|A4|U|1238
6GZX|1|A4|G|1239
6GZX|1|A4|C|1240
6GZX|1|A4|C|1241
6GZX|1|A4|A|1242
6GZX|1|A4|C|1243
6GZX|1|A4|C|1244
6GZX|1|A4|C|1245
6GZX|1|A4|G|1246
6GZX|1|A4|G|1247
6GZX|1|A4|C|1248
6GZX|1|A4|A|1249
6GZX|1|A4|A|1250
6GZX|1|A4|C|1251
6GZX|1|A4|G|1252
6GZX|1|A4|G|1253
6GZX|1|A4|G|1254
6GZX|1|A4|G|1255
6GZX|1|A4|A|1256
6GZX|1|A4|G|1257
6GZX|1|A4|C|1258
6GZX|1|A4|U|1259
6GZX|1|A4|A|1260
6GZX|1|A4|A|1261
6GZX|1|A4|U|1262
6GZX|1|A4|C|1263
6GZX|1|A4|G|1264
6GZX|1|A4|C|1265

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain C4

30S ribosomal protein S3

Chain J4

30S ribosomal protein S10

Chain M4

30S ribosomal protein S13

Chain N4

30S ribosomal protein S14 type Z

Chain U4

30S ribosomal protein Thx