HL_6GZX_192

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GCGUGGAACCACCCGUUCCCAUUCCGAACACGGAAGUGAAACGCGCC

Length

47 nucleotides

Bulged bases

6GZX|1|B1|U|43, 6GZX|1|B1|C|44

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|B1|G|21
6GZX|1|B1|C|22
6GZX|1|B1|G|23
6GZX|1|B1|U|24
6GZX|1|B1|G|25
6GZX|1|B1|G|26
6GZX|1|B1|A|27
6GZX|1|B1|A|28
6GZX|1|B1|C|29
6GZX|1|B1|C|30
6GZX|1|B1|A|31
6GZX|1|B1|C|32
6GZX|1|B1|C|33
6GZX|1|B1|C|34
6GZX|1|B1|G|35
6GZX|1|B1|U|36
6GZX|1|B1|U|37
6GZX|1|B1|C|38
6GZX|1|B1|C|39
6GZX|1|B1|C|40
6GZX|1|B1|A|41
6GZX|1|B1|U|42
6GZX|1|B1|U|43
6GZX|1|B1|C|44
6GZX|1|B1|C|45
6GZX|1|B1|G|46
6GZX|1|B1|A|47
6GZX|1|B1|A|48
6GZX|1|B1|C|49
6GZX|1|B1|A|50
6GZX|1|B1|C|51
6GZX|1|B1|G|52
6GZX|1|B1|G|53
6GZX|1|B1|A|54
6GZX|1|B1|A|55
6GZX|1|B1|G|56
6GZX|1|B1|U|57
6GZX|1|B1|G|58
6GZX|1|B1|A|59
6GZX|1|B1|A|60
6GZX|1|B1|A|61
6GZX|1|B1|C|62
6GZX|1|B1|G|63
6GZX|1|B1|C|64
6GZX|1|B1|G|65
6GZX|1|B1|C|66
6GZX|1|B1|C|67

Current chains

Chain B1

5S ribosomal RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain F1

50S ribosomal protein L5

Chain N1

50S ribosomal protein L18

Chain Z1

50S ribosomal protein L31