HL_6GZX_200
3D structure
- PDB id
- 6GZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (ice)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.57 Å
Loop
- Sequence
- GCGAUAACGUC
- Length
- 11 nucleotides
- Bulged bases
- 6GZX|1|A1|U|1005, 6GZX|1|A1|C|1008
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GZX_200 not in the Motif Atlas
- Geometric match to HL_8H1B_001
- Geometric discrepancy: 0.3892
- The information below is about HL_8H1B_001
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_86621.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6GZX|1|A1|G|1001
6GZX|1|A1|C|1002
6GZX|1|A1|G|1003
6GZX|1|A1|A|1004
6GZX|1|A1|U|1005
6GZX|1|A1|A|1006
6GZX|1|A1|A|1007
6GZX|1|A1|C|1008
6GZX|1|A1|G|1009
6GZX|1|A1|U|1010
6GZX|1|A1|C|1011
Current chains
- Chain A1
- 23S ribosomal RNA
Nearby chains
- Chain B1
- 5S ribosomal RNA; 5S rRNA
- Chain L1
- 50S ribosomal protein L16
- Chain V1
- 50S ribosomal protein L27
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