HL_6GZX_213

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

6GZX|1|A1|A|2832

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_213 not in the Motif Atlas

Homologous match to HL_4WF9_064

Geometric discrepancy: 0.3243

The information below is about HL_4WF9_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6GZX|1|A1|G|2831
6GZX|1|A1|A|2832
6GZX|1|A1|A|2833
6GZX|1|A1|G|2834
6GZX|1|A1|A|2835
6GZX|1|A1|C|2836
6GZX|1|A1|C|2837
6GZX|1|A1|A|2838
6GZX|1|A1|C|2839

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L3

Chain M1

50S ribosomal protein L17

Chain O1

50S ribosomal protein L19