HL_6GZX_216

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

6GZX|1|A2|C|572

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_216 not in the Motif Atlas

Geometric match to HL_1MFQ_002

Geometric discrepancy: 0.3063

The information below is about HL_1MFQ_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6GZX|1|A2|C|570
6GZX|1|A2|G|571
6GZX|1|A2|C|572
6GZX|1|A2|A|573
6GZX|1|A2|A|574
6GZX|1|A2|G|575

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain Q2

50S ribosomal protein L21